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@stephenplaza | |||||
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Proud to introduce @janeliaflyem "hemibrain" #hemibrain: a connectome of the Drosophila central brain. biorxiv.org/content/10.110…. @stardazed0 @michalj
Please see overview website: janelia.org/project-team/f…
Play with data on neuPrint:
neuprint.janelia.org
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Stephen Plaza
@stephenplaza
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22. sij |
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Takes a large team effort: thanks Janelia, @janeliaflyem, Connectomics Group at Google @stardazed0 @michalj , @herrsaalfeld and many others. Team Science!! pic.twitter.com/ROtYDrVl61
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Stephen Plaza
@stephenplaza
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22. sij |
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Many thanks to large proofreader effort led by Pat Rivlin and Ruchi Parekh. Incredible software and algorithm group @garybhuang @wtkatz, Stuart Berg, @philiphubbard , Lowell Umayam, @neomorphic , Tom Dolafi, Don Olbris, @_zhaot , Rob Svirskas ... and many others!
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Stephen Plaza
@stephenplaza
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22. sij |
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For new neuPrint users ... you will need to login with any google email credential. Tutorials and instructions in the 'i' section. Tutorial here: youtu.be/1JDgMHVJH9g
Other questions or issues today: groups.google.com/forum/#!forum/…
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Stephen Plaza
@stephenplaza
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22. sij |
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neuroglancer is a great way to browse the data. Jeremy made a lot of nice additions recently: …ain-dot-neuroglancer-demo.appspot.com/#!%7B%22dimens…
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Stephen Plaza
@stephenplaza
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22. sij |
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We are hoping that non-fly people will fall in love with flies! Here are some of our favorite neurons! youtu.be/_zRmXj5YVpU
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Stephen Plaza
@stephenplaza
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22. sij |
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But let's say you don't care about flies and just like big graphs. Here is a compact 26TB->25MB data model reduction containing the adjacency matrix. We annotate brain region information for each connection to make the model richer. storage.googleapis.com/hemibrain/v1.0…
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Stephen Plaza
@stephenplaza
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22. sij |
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We tried to make the best dataset possible but this is "v1.0". We will have a new revision in a few months. Feel free to make comments and add annotations to the dataset using neuroglancer. youtu.be/n2cwzaSO9I0
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Stephen Plaza
@stephenplaza
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22. sij |
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A better link for viewing neuroglancer: …ain-dot-neuroglancer-demo.appspot.com/#!%7B%22dimens…
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Stephen Plaza
@stephenplaza
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22. sij |
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For people that are interesting in bulk downloading data ... it is best not to do this through the interactive UI in neuPrint. Please consult dvid.io for more details. We will also provide a big directory of all the skeleton morphologies soon as well.
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Stephen Plaza
@stephenplaza
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22. sij |
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Here is a link for all data we inject into neuPrint in CSV format. If you want everything that goes into neuPrint (sans the 3d data and skeletons), download from here: storage.cloud.google.com/hemibrain-rele…
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