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Rob Patro
Assistant Professor @ Stony Brook University. I ♥ science & have a serious interest in (compiled, statically-typed) programming languages! Views are my own.
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Rob Patro proslijedio/la je tweet
Dr. Robyn Lee 15 h
Happy to see this work with published! A big thank you to our collaborators and co-authors, in particular, the Nunavik Regional Board of Health and Social Services & Dr. Jean-François Proulx.
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Alicia Oshlack 10 h
New paper from PhD student Andreas Halman evaluating short tandem repeat genotyping tools in exome data. Constructive comments and criticisms welcome.
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Jason Williams 14 h
Don’t know if remembers speaking at my commencement but I remember he like Oatmeal cookies and am happy to bake some the next time he visits
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Rob Patro 21 h
Narrator: The journal was not, in fact, kidding.
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Rob Patro 21 h
Odgovor korisniku/ci @RayanChikhi @m_salson i 5 ostali
Looks vary cool! Really wish I could have attended DSB! If you're not already using them, I wonder if some deBGR style tricks could help save even more space on encoding counts . cc (also, what was the intermediate mantis disk without counts?)
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Rayan Chikhi 21 h
Odgovor korisniku/ci @m_salson @ZaminIqbal i 4 ostali
Joint work with , , . Preprint soon. Some results in pic below, cc
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Michael Love 3. velj
Asked to write a chapter about RNA-seq counts modeling, I used bookdown to put all the material online. Includes some new workflow pieces like tximeta for import and swish for transcript level:
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Michael Schatz 3. velj
Odgovor korisniku/ci @KMS_Meltzy @samkovaka
Thank you. Really all the credit goes to for the brilliant programming and heroic efforts to get it all working. Im really excited to use this to profile mutations that have never been seen before in cancer and other important diseases
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Michael Schatz 3. velj
Odgovor korisniku/ci @samkovaka @timp0 i 2 ostali
UNCALLED works directly from signal data, and complements the amazing work et al also posted today to demonstrate streaming basecalling for a similar capability:
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bioRxiv 3. velj
Targeted nanopore sequencing by real-time mapping of raw electrical signal with UNCALLED
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Rafael Irizarry 3. velj
The Role of Academia in Data Science Education is now published. We argue that data science is not a discipline but an umbrella term for a complex process involving a team with complementary skills. We then provide recs for designing academic programs.
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Titus Brown 2. velj
I welcome our new rust overlords… :)
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Rob Patro 2. velj
Odgovor korisniku/ci @ducktapeprogra1 @luizirber
Absolutely; so much better than C++ in this regard (and in most regards so far :)).
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Rob Patro 1. velj
Odgovor korisniku/ci @luizirber @erikgarrison
Yes; clippy is phenomenal :). Thanks for the PRs!
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Rob Patro 1. velj
Odgovor korisniku/ci @luizirber
Woohoo, looking forward to it!
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Rob Patro proslijedio/la je tweet
Ben Langmead 1. velj
Keeping my eye out for the Feb 4 reveal, but a very good result for already!
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Rob Patro 1. velj
our lab's first tool in --- ! We'd love any rust advice / feedback you might have :)
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Rob Patro 1. velj
Ghostscript can convert to PDF/A ... if you convert to PS first. It's nice to have a little command line script you can run on the PDFs in a directory. On the other hand, the specifics of the PDF/A format deposition are a bit absurd.
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Abhi Nellore 30. sij
1/7 Congrats to , , my co-conspirator and especially the 🌟 of the show for making the very first research paper in 's new subjournal NAR Cancer happen!
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Michael Schatz 30. sij
Odgovor korisniku/ci @acarroll_ATG
Oh yes, this is just the first of many potential applications. The performance improvement grows with the size of the data, so are keen to apply to metagenomics and pangenomics
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