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Luiz Irber
Computer Science PhD candidate at , DIB lab minion, enthusiast, Rustacean and Pythonista.
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Luiz Irber proslijedio/la je tweet
Taylor Reiter 7 h
For one of the pipelines I'm working on, I recently used Salmon to quantify proteins in a metagenome...and I'm not sure if this was a very bad idea. I would love to hear if this is a very bad idea, or if it's ok. Pipeline here:
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Rayan Chikhi 21 h
, presents our work (REINDEER) for querying abundances of sequences within large collections of datasets.
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indygreg 9 h
This thread turned into a meaningful change to Rust compiler error output: . The Rust community is amazing. Thank you !
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Dr Isabela Le Bras 14 h
Odgovor korisniku/ci @D_GwynEvans @fstraneo i 2 ostali
My new paper with and is out in GRL! We found a fast-track into the boundary current for a new "upper intermediate" water mass formed by convection in the Irminger Sea
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JOSS 18 h
Just published in : 'ReferenceSeeker: rapid determination of appropriate reference genomes'
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Luiz Irber 4. velj
Odgovor korisniku/ci @braincode
I'm using byteorder now, but Nom seems easier to maintain/extend/verify. Not sure I need async-await/streaming for now, but will keep in mind =]
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Mo Torres 29. ožu
Odgovor korisniku/ci @danielle_zoe
A natural extension of learning about the "United States" and "Latin America" as separate entities, as if the entire continent (the Americas) doesn't share a singular history of colonialism, genocide, and slavery...
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Mo Torres 29. ožu
If "Latinos" aren't all the same race in Latin America, why would we expect them to be in the United States?
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Luiz Irber 3. velj
Odgovor korisniku/ci @biocrusoe @rustlang
done =]
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Michael R. Crusoe 3. velj
Attention users, want easy export for your apps? Speak up here!
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Luiz Irber 3. velj
Odgovor korisniku/ci @hannahhouts
(sorry)
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Luiz Irber proslijedio/la je tweet
Erik Garrison 2. velj
Odgovor korisniku/ci @luizirber @nomad421
I've pulled those changes into another repo: . (It's areally simple replacement for an awk script I kept writing.) Thanks for the tips! Working my way up to a real application...
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Luiz Irber 1. velj
Odgovor korisniku/ci @nomad421 @erikgarrison
But looking pretty good! Some minor things to improve: - run `cargo fmt` in the code (PR #1 adds checks for that in CI) - make it 2018 edition, so you don't need most of the `extern crate` declarations in - `cargo clippy` also has many suggestions =]
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Luiz Irber 1. velj
Odgovor korisniku/ci @nomad421 @erikgarrison
OK, added two: one for CI, and another with some scaffolding for a test. Both are similar (err, pretty much the same =P) to PRs I made for 's gaffy tool a week ago:
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Luiz Irber 1. velj
Odgovor korisniku/ci @nomad421
PRs incoming =]
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Luiz Irber 1. velj
Odgovor korisniku/ci @jiminy_crist @betatim i 3 ostali
and maybe milksnake would work with C/C++ code too? Intriguing. Deployment-wise, I like that we have one wheel per platform in sourmash: (since the wrapped cffi doesn't depend on the CPython API directly), and you don't need one wheel per Python version.
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Luiz Irber 1. velj
Odgovor korisniku/ci @jiminy_crist @betatim i 3 ostali
Oh, I never thought about numba, this opens so many interesting venues... But I agree about cython & cffi being nicer to use. I use cffi (thru milksnake), as in . I like that milksnake takes care of building Rust shared lib, and I can focus on using cffi
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Rob Patro 1. velj
our lab's first tool in --- ! We'd love any rust advice / feedback you might have :)
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Russell Neches 1. velj
Calling all scientists with relevant domain experience. There are 313 results on for "coronavirus" right now. Almost none of them have attached reviews. Let's fix that by Monday morning. Who's with me?
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Luiz Irber 1. velj
Odgovor korisniku/ci @amanjeev @ljdursi
that plays a small part, but mostly happy to see awesome people working together
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