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jburnmurdoch's profile
John Burn-Murdoch
John Burn-Murdoch
John Burn-Murdoch
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@jburnmurdoch

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John Burn-MurdochVerified account

@jburnmurdoch

Stories, stats & scatterplots for @FinancialTimes | Mainly Covid for now | Visiting senior fellow @LSEdataScience | john.burn-murdoch@ft.com | #dataviz

Doncaster  ➡️ London
ft.com/jbm
Joined June 2009

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    1. John Burn-Murdoch‏Verified account @jburnmurdoch 10 Dec 2021

      NEW thread: data show South Africa’s Omicron wave is resulting in less severe disease and death than past waves, though health officials say it’s too early to be sure, and severe outcomes will continue to climb. Story by me, @jsphctrl, @mroliverbarnes: https://www.ft.com/content/0ee745ce-ac55-46a9-9766-0b419821a79d …pic.twitter.com/6DClwASKVi

      135 replies 1,205 retweets 3,571 likes
      Show this thread
    2. John Burn-Murdoch‏Verified account @jburnmurdoch 10 Dec 2021

      I’ve not adjusted the dates in that chart, so you can see that admissions typically lag cases by several days, and deaths lag by around two weeks. So Omicron deaths *will continue to rise* but it’s clear that they’re not tracking cases as closely as they did in the Delta wave.pic.twitter.com/KBM9ombtYA

      13 replies 79 retweets 370 likes
      Show this thread
    3. John Burn-Murdoch‏Verified account @jburnmurdoch 10 Dec 2021

      John Burn-Murdoch Retweeted Gabrielle Babbington

      Now, we need to be careful here, because not only do deaths lag cases, we also need to note that the rapid rise of Omicron means there have been fewer cases accumulated than at the same stage of the slower-rising Delta wave, so we would expect fewer deathshttps://twitter.com/glbabbington/status/1468545290298822657 …

      John Burn-Murdoch added,

      Gabrielle Babbington @glbabbington
      That is, the proportion of cases we’ve seen thus far in the super-fast Omicron wave is smaller than the proportion of cases we’d seen at this point in the slower Delta wave. This factor alone could cause an unusually low proportion of severe/ICU at first, says @dr_kkjetelina. pic.twitter.com/d8HEfXOTFn
      Show this thread
      7 replies 46 retweets 281 likes
      Show this thread
    4. John Burn-Murdoch‏Verified account @jburnmurdoch 10 Dec 2021

      To that end, here are *cumulative* cases & deaths rather than daily numbers, and I’ve also shifted cases backwards by 2 weeks, so this is "compared to the number of people who had tested positive by 2 weeks earlier, how many deaths had occurred 13 days on?" Ratio has reduced 🙏pic.twitter.com/QIIayinztT

      20 replies 92 retweets 482 likes
      Show this thread
    5. John Burn-Murdoch‏Verified account @jburnmurdoch 10 Dec 2021

      An obvious question to ask at this point is: could this not just be due to differences in age profile of cases? Well, today @nicd_sa published its weekly Covid hospital surveillance report, including wave-vs-wave comparisons of severe disease by age... https://www.nicd.ac.za/wp-content/uploads/2021/12/COVID-19-HOSPITAL-SURVEILLANCE-UPDATE_WEEK-48-2021_rev.pdf …pic.twitter.com/B0wP0IyZtZ

      8 replies 70 retweets 341 likes
      Show this thread
      John Burn-Murdoch‏Verified account @jburnmurdoch 10 Dec 2021

      They also published in-hospital mortality by age, which show a similar pattern. Key point: all of these data are for patients no longer in hospital, so it’s a like-for-like comparison across waves, not biased by Omicron having patients whose outcomes are yet to be determined.pic.twitter.com/8HsX7oUP5J

      8:10 AM - 10 Dec 2021
      • 58 Retweets
      • 298 Likes
      • Saarah Ali NIHR Nottm BRC Lung Simone Caroline Mulryne 💙💛🌻 noah Juan Enriquez PePe 🇦🇷 Orthogonality not confirmed. jimiska
      6 replies 58 retweets 298 likes
        1. New conversation
        2. John Burn-Murdoch‏Verified account @jburnmurdoch 10 Dec 2021

          Key caveat We *are* still early in this wave, and its age profile still skews younger than past waves, so some of the population-wide drop in severe disease will be due to age, and rates may shift upward in coming weeks. But so far, evidence suggests an age-independent drop too.

          3 replies 37 retweets 279 likes
          Show this thread
        3. John Burn-Murdoch‏Verified account @jburnmurdoch 10 Dec 2021

          And now, I know I keep banging this drum, but the observed drop in rates of severe disease a) does not necessarily mean Omicron is inherently milder than previous variants, because b) ...

          4 replies 35 retweets 235 likes
          Show this thread
        4. John Burn-Murdoch‏Verified account @jburnmurdoch 10 Dec 2021

          A reduction in rates of severe disease and death relative to cases is not a new pattern! Remember first chart in this thread? Here’s the exact same pattern, but in UK. Did we say "Delta appears to be milder"? Nope. What changed was levels of immunity, here mostly via vaccines.pic.twitter.com/g8VRwao751

          22 replies 138 retweets 557 likes
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        5. John Burn-Murdoch‏Verified account @jburnmurdoch 10 Dec 2021

          John Burn-Murdoch Retweeted Natalie E. Dean, PhD

          On a related note, @nataliexdean has a magnificent visual explainer here showing how a new variant like Omicron — one that can evade some of our antibodies and cause reinfections/breakthrough cases — can appear less virulent even if it isn’thttps://twitter.com/nataliexdean/status/1468988174693289994 …

          John Burn-Murdoch added,

          Natalie E. Dean, PhDVerified account @nataliexdean
          A sketch to explain how a new variant may appear milder even with no change in underlying virulence. This can occur because, when calculating the fraction of cases that are severe, the denominator now includes many re-infections that had previously been averted. A thread. 1/8 pic.twitter.com/XxrYHnb6XY
          Show this thread
          4 replies 63 retweets 324 likes
          Show this thread
        6. John Burn-Murdoch‏Verified account @jburnmurdoch 10 Dec 2021

          Point being, what we’re seeing with Omicron may be best understood not as: "this variant makes you less sick", but as "loads of people who would not have been infected at all with other variants, are now getting mild infections [which pushes the severe shares of cases down]".

          7 replies 173 retweets 589 likes
          Show this thread
        7. John Burn-Murdoch‏Verified account @jburnmurdoch 10 Dec 2021

          And that frame of understanding demonstrates why Omicron is still a serious concern: Lots of people *are* still getting very sick in South Africa, it’s just that they’re being drowned out in the stats by the deluge of mild cases among those with prior infection or vaccination.pic.twitter.com/PTJ7QIM0Z0

          22 replies 227 retweets 677 likes
          Show this thread
        8. John Burn-Murdoch‏Verified account @jburnmurdoch 10 Dec 2021

          And because of the lag between cases and severe disease, those ICU and ventilator lines will continue to climb towards Delta levels even if the Omicron wave were to go into reverse tomorrow.

          1 reply 41 retweets 236 likes
          Show this thread
        9. John Burn-Murdoch‏Verified account @jburnmurdoch 10 Dec 2021

          John Burn-Murdoch Retweeted Louis Rossouw

          But speaking of the Omicron wave, I’ll end today’s update with a glimmer of optimism, via the invaluable @lrossouw: There are tentative signs that new cases in Gauteng may be flattening, and Tshwane — where Omicron first took off — *may* even have peakedhttps://twitter.com/lrossouw/status/1469081889151541254 …

          John Burn-Murdoch added,

          Louis Rossouw @lrossouw
          In Gauteng daily cases may be flattening out. Tshwane might have peaked. Cases are at 2,717 per day after peaking at 2,852 per day (7-day moving averages). Wave 3 peaked at 3,210 per day. pic.twitter.com/VGzfvmAdNI
          Show this thread
          12 replies 50 retweets 300 likes
          Show this thread
        10. John Burn-Murdoch‏Verified account @jburnmurdoch 10 Dec 2021

          So, finishing back where we started: If cases in Gauteng are close to peaking, then the question is how high will that red deaths line will climb in the next 2-3 weeks as the lag works its way through. I don’t see it getting near the 100% mark (Delta peak deaths).pic.twitter.com/IYQhle0qZj

          14 replies 64 retweets 322 likes
          Show this thread
        11. John Burn-Murdoch‏Verified account @jburnmurdoch 10 Dec 2021

          Conclusions • Rate of Omicron cases resulting in severe disease is lower than past waves • But this is due in large part to dilution of that ratio due to mild cases in vaxxed & recovered • Numbers with severe disease are lower than past waves but rising, and will keep climbing

          14 replies 129 retweets 509 likes
          Show this thread
        12. John Burn-Murdoch‏Verified account @jburnmurdoch 10 Dec 2021

          As always, please let me know if there are things I’m missing here, if there’s additional data you want to see, if you have additional data I’ve missed etc. We’ll be back on Twitter Spaces next Weds to bring you the latest developments and answer your questions.

          27 replies 15 retweets 182 likes
          Show this thread
        13. John Burn-Murdoch‏Verified account @jburnmurdoch 10 Dec 2021

          Finally I’ll repeat that we owe an immense debt of gratitude to researchers, epidemiologists, public health officials and doctors in South Africa who continue to share timely, invaluable data and insights that leave other countries far better prepared for their own Omicron waves.

          10 replies 96 retweets 965 likes
          Show this thread
        14. John Burn-Murdoch‏Verified account @jburnmurdoch 10 Dec 2021

          John Burn-Murdoch Retweeted Nafnlaus  🇺🇦  🇮🇸

          Addendum: excellent illustration here from @enn_nafnlaus of how, in a faster wave like Omicron, the lag between cases & deaths effectively grows, making it even more vital to remember that numbers for severe disease will keep climbing for some time yethttps://twitter.com/enn_nafnlaus/status/1465713586492174341 …

          John Burn-Murdoch added,

          Nafnlaus  🇺🇦  🇮🇸 @enn_nafnlaus
          A reminder when viewing exponential growth charts: a wave with faster case growth, plotted against waves with slower growth, will *inherently* seem to take longer for hospitalizations, ICU admissions and deaths to "catch up". Simulated scenario with varying doubling times below. https://twitter.com/jburnmurdoch/status/1465659957546782725 … pic.twitter.com/NmwWOwFhCW
          Show this thread
          21 replies 60 retweets 297 likes
          Show this thread
        15. End of conversation

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