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JBMS
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jbiomedsem
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Journal of Biomedical Semantics, open-access journal published by BMC
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257
Tweets
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39
Following
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185
Followers
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JBMS
@jbiomedsem
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May 30 |
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Apologies for the silence, I took on a challenging position and had to settle my mind first. (see nuig.insight-centre.org)
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JBMS
@jbiomedsem
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23 Mar 16 |
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Dear all, I am back after some silence. I am now heading Insight in Galway. Great place, more biomedical semantics to come.
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JBMS
@jbiomedsem
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29 Jun 15 |
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The official impact factor for JBMS is no out. 2,26 is a good start and credited to the good contributions that we have received from you.
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JBMS
@jbiomedsem
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29 Jun 15 |
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Dear all, apologies for the long silence. Busy times ... :-)
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JBMS
@jbiomedsem
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2 Mar 15 |
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All about tackling the semantics of phenotypes: phenoday2015.bio-lark.org; workshop at the ISMB@Dublin
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JBMS
@jbiomedsem
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12 Feb 15 |
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bit.ly/AokiKinoshita-…: Rdf-izing DDBj, PDBj, LinkDb for public use through SPARQL Query, Facet View, Crawling Linked Data; BioHackathon2011
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JBMS
@jbiomedsem
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11 Feb 15 |
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bit.ly/Hur-TmGenePair…: Text mine interacting gene pairs, using ‘Interaction Network Ontology’ (INO) as trigger word input (Stanford Parser)
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JBMS
@jbiomedsem
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10 Feb 15 |
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bit.ly/Kafkas-RefsInS…: References to database entries are more frequent in the supplementary data than the body of the manuscript.
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JBMS
@jbiomedsem
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9 Feb 15 |
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bit.ly/Chaudhri-Schoo…: Formalizing biological schoolbook knowledge (causality, partiality, negation), comparative analysis across books
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JBMS
@jbiomedsem
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8 Feb 15 |
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bit.ly/Lingutla-Aiso-… for optimized image segmentation (in layers), annotation w. ontological labels (web service enabled), packaging all
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JBMS
@jbiomedsem
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7 Feb 15 |
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bit.ly/Clark-TimeEven…: Reasoning for temporal ordering of events in clinical narratives, 95% accuracy, late stent thrombosis identification
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JBMS
@jbiomedsem
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6 Feb 15 |
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bit.ly/Dietze-TermGen…: Position new classes with a Web-based indexing/reasoning engine; suggests conflicts, alternatives, related classes
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JBMS
@jbiomedsem
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5 Feb 15 |
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- bit.ly/Saleem-TopFed-…: Query 20 bn triples (RDF-ized Cancer Genome Atlas), good performance on SPARQL endpoints over federation (FedX)
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JBMS
@jbiomedsem
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4 Feb 15 |
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bit.ly/Gonzalez-OpenL…: Bio2Rdf as SADI service, 26 resources on independent SPARQL endpoints each, GUI on top of the SHARE endpoint
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JBMS
@jbiomedsem
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3 Feb 15 |
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bit.ly/Balhoff-Phenex…: Phenex: broker system for requesting terms aligned with NCBO services, avoiding conflicts, supporting curators.
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JBMS
@jbiomedsem
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2 Feb 15 |
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bit.ly/Diallo-ServOma…: XL service matching concept labels, with Lucene, term and contextual similarity, 62-88 % F1-M (on NCI, Snomed, FMA)
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JBMS
@jbiomedsem
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1 Feb 15 |
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bit.ly/Vaz-typon-JBMS…: 33 classes + 41 propertiesto classify bacteria; “isolate” as basic concept; keeping track of allel information too.
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JBMS
@jbiomedsem
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25 Sep 14 |
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bit.ly/Aranguren-Sadi… SADI services (OWL) in Galaxy to suggest services, exploit/produce RDF LOD, automatic reasoning for data consistency
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JBMS
@jbiomedsem
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24 Sep 14 |
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bit.ly/Hettne-ResObjM…: Research objects structuring semantic descriptions of workflows from hypothesis to conclusion, for Taverna & Galaxy
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JBMS
@jbiomedsem
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23 Sep 14 |
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bit.ly/Laurenne-Check…: Taxa data and meta-data as semantic Web resource for consistent use in distributed solutions.
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