| Pretraživanje | Osvježi |
|
Fabian Theis
@fabian_theis
|
21 h |
|
We're excited to release a #scanpy update for the analysis and visualization of #spatialTranscriptomics data, focussing on @10xGenomics Visium and MERFISH, thx @g_palla1. Tutorial at nbviewer.jupyter.org/github/theisla…
Support for different data types and integration with #scRNAseq soon! pic.twitter.com/SC6sYldpED
|
||
|
||
|
Lior Pachter
@lpachter
|
1. velj |
|
In our #RNAseq & #scRNAseq work we use @ensembl's databases. Two months ago @sinabooeshaghi noticed some inconsistencies between @ensembl's cDNA fasta and GTF files and investigated with @lioscro. Now @LambdaMoses has written up an in-depth analysis: fromsystosys.netlify.com/2020/01/31/com…
|
||
|
|
||
|
Arash Davari Serej
@CancerEvolution
|
4. velj |
|
Single-cell transcriptomic atlas of the human retina identifies cell types associated with age-related macular degeneration
Fig. Single-cell transcriptomic analysis reveals human retina diversity | @manoliskellis
Ref: go.nature.com/37VmsSR
#singlecell #scRNAseq #retina pic.twitter.com/PLEPKTKETP
|
||
|
||
|
Fabian Theis
@fabian_theis
|
29. lis |
|
Excited to share our scVelo manuscript - led by @VolkerBergen and @falexwolf, we generalize the beautiful RNA velocity concept from @KharchenkoLab and @slinnarsson to transient cell states through dynamical modeling. biorxiv.org/content/10.110… and scvelo.org #scRNAseq pic.twitter.com/LuuKjmKbYt
|
||
|
||
|
André Rendeiro
@afrendeiro
|
19. pro |
|
Very excited to share our new preprint describing a method for ultra-high throughput single-cell RNA-seq biorxiv.org/content/10.110… #scRNAseq pic.twitter.com/iROFp3wDMJ
|
||
|
||
|
Nikos Karaiskos
@nu_karaiskos
|
4. velj 2019. |
|
How to arrange #scRNAseq in space? We released the code of novoSpaRc, including scripts reproducing results of our paper bit.ly/2D7mSqS
|
||
|
|
||
|
RNA-Seq Blog
@RNASeqBlog
|
3. velj |
|
Researchers from the @JohnsHopkinsSPH systematically evaluate the performance of 18 state-of-the-art #scRNAseq imputation methods using cell line and tissue data measured across experimental protocols. rna-seqblog.com/a-systematic-e…
|
||
|
|
||
|
ImmunoSCOPE
@Immunoscope
|
29. sij |
|
Cell atlas of the human thymus during development | #scRNAseq #Thymus | Tom Taghon, Muzlifah Haniffa & Sarah Teichmann @taghon_t @Muzz_Haniffa @park_jongeun @Zeziliaconzeta @sangerinstitute @ICMNewcastle @NIHRNewcBRC @ugent_fge | Preprint @biorxivpreprint bit.ly/2GtydDV pic.twitter.com/bVRpeBXniy
|
||
|
||
|
David Patterson
@dpatters10
|
17. lip |
|
Yoooo...MULTI-seq paper is live on @naturemethods!! Our #scRNAseq sample multiplexing method uses lipid-modified oligos to append sample barcodes to cells and nuclei regardless of species or surface markers rdcu.be/bG4np shouts to @cmcginnisUCSF @Danny__Conrad @CAT_UCSF
|
||
|
|
||
|
Adam C. Miller
@drzebrafish
|
12. pro |
|
Congrats on the official pub Dylan and Lauren (@LSaund11) - excellent work! doi.org/10.1016/j.ydbi… #zebrafish #scRNAseq
We hope that all you fish folk find some useful transcriptional cell types, genes, and trajectories to keep you busy for a while. Let us know how we can help.
|
||
|
|
||
|
Lior Pachter
@lpachter
|
3. velj |
|
I've spent a lot of time the past two weeks writing and editing R and python code for #scRNAseq analysis.
Python has eclipsed R.
Don't @ me.
|
||
|
|
||
|
Arash Davari Serej
@CancerEvolution
|
15 h |
|
ZipSeq: Barcoding for Real-time Mapping of Single Cell Transcriptomes.
Using ZipSeq, they mapped gene expression in 3 settings: in-vitro wound healing, live lymph node sections & in a live tumor microenvironment (TME)
Ref: bit.ly/37ZNrN4
#singlecell #ZipSeq #scRNAseq pic.twitter.com/WrNzpDyoqY
|
||
|
||
|
Ben Humphreys
@HumphreysLab
|
22. kol |
|
Chinook Therapeutics bags $65M to bring precision medicine to the kidney #scRNAseq @benofreedman fiercebiotech.com/biotech/chinoo…
|
||
|
|
||
|
Ross Dobie
@RossADobie
|
12. stu |
|
Check out our paper using #scRNAseq to interrogate #mesenchyme in liver #fibrosis, now out in @CellReports. Single-Cell Transcriptomics Uncovers Zonation of Function in the Mesenchyme during Liver Fibrosis cell.com/cell-reports/f…
|
||
|
|
||
|
Mel Eckersley-Maslin
@meleckmas
|
7. stu |
|
Wondered how #bivalent chromatin is targeted? Our @biorxivpreprint on Dppa2/4 is online! We use #scRNAseq, #MachineLearning and #epigenetics in #stemcells to uncover an exciting new mechanism. @ReikLab @BabrahamInst @CRUKCambridge biorxiv.org/content/10.110… pic.twitter.com/ShLMzVd9LE
|
||
|
||
|
Holger Heyn
@hoheyn
|
15. sij |
|
NIGHTMARE AFTER XMAS!
SORRY/HAPPY to present our benchmarking work on #singlecell sample preservation artifacts.
We detected strong systematic biases related to sampling timing!
MUST-READ for #scRNAseq and #scATACseq of #biobank and clinical cohorts.
biorxiv.org/content/10.110…
|
||
|
|
||
|
Patrik Andersson
@pcandersson
|
23. pro |
|
More evidence that CD4+ T cells are important for CD8+ T cell cytotoxicity in cancer and infection. Published this month in @ImmunityCP: bit.ly/2QcsKWl
___
#Immunity #cancer #immunotherapy #AcademicTwitter #scicomm #scRNAseq pic.twitter.com/YbxE7zHKmX
|
||
|
||
|
Daniel Lipka
@dblipka1
|
20. ožu |
|
Great work that demonstrates the critical steps in #scRNAseq analysis both in library-prep and in computational analysis: A Systematic Evaluation of Single Cell RNA-Seq Analysis Pipelines biorxiv.org/content/10.110…
|
||
|
|
||
|
Conor Gruber
@ConorGruber
|
18. lis |
|
Excited to share our preprint on a patient with a JAK1 GoF mutation suffering systemic immunodysregulation—novel biology, custom #scRNAseq, and #PersonalizedMedicine that resolved a lifelong #RareDisease! Huge thanks to all involved! biorxiv.org/content/10.110…
|
||
|
|
||
|
Jan Hasenauer
@JanHasenauer
|
4 h |
|
Great tutorial by Malte Lücken on #scRNAseq at the Workshop on Computational Models in Biology and Medicine 2020. Check out the paper: embopress.org/doi/abs/10.152…
#SystemsBiology, #SystemsMedicine, #bioinformatics.
|
||
|
|
||