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Fabian Theis 21 h
We're excited to release a update for the analysis and visualization of data, focussing on Visium and MERFISH, thx . Tutorial at Support for different data types and integration with soon!
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Lior Pachter 1. velj
In our & work we use 's databases. Two months ago noticed some inconsistencies between 's cDNA fasta and GTF files and investigated with . Now has written up an in-depth analysis:
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Arash Davari Serej 4. velj
Single-cell transcriptomic atlas of the human retina identifies cell types associated with age-related macular degeneration Fig. Single-cell transcriptomic analysis reveals human retina diversity | Ref:
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Fabian Theis 29. lis
Excited to share our scVelo manuscript - led by and , we generalize the beautiful RNA velocity concept from and to transient cell states through dynamical modeling. and
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André Rendeiro 19. pro
Very excited to share our new preprint describing a method for ultra-high throughput single-cell RNA-seq
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Nikos Karaiskos 4. velj 2019.
How to arrange in space? We released the code of novoSpaRc, including scripts reproducing results of our paper
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RNA-Seq Blog 3. velj
Researchers from the systematically evaluate the performance of 18 state-of-the-art imputation methods using cell line and tissue data measured across experimental protocols.
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ImmunoSCOPE 29. sij
Cell atlas of the human thymus during development | | Tom Taghon, Muzlifah Haniffa & Sarah Teichmann | Preprint
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David Patterson 17. lip
Yoooo...MULTI-seq paper is live on !! Our sample multiplexing method uses lipid-modified oligos to append sample barcodes to cells and nuclei regardless of species or surface markers shouts to
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Adam C. Miller 12. pro
Congrats on the official pub Dylan and Lauren () - excellent work! We hope that all you fish folk find some useful transcriptional cell types, genes, and trajectories to keep you busy for a while. Let us know how we can help.
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Lior Pachter 3. velj
I've spent a lot of time the past two weeks writing and editing R and python code for analysis. Python has eclipsed R. Don't @ me.
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Arash Davari Serej 15 h
ZipSeq: Barcoding for Real-time Mapping of Single Cell Transcriptomes. Using ZipSeq, they mapped gene expression in 3 settings: in-vitro wound healing, live lymph node sections & in a live tumor microenvironment (TME) Ref:
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Ben Humphreys 22. kol
Chinook Therapeutics bags $65M to bring precision medicine to the kidney
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Ross Dobie 12. stu
Check out our paper using to interrogate in liver , now out in . Single-Cell Transcriptomics Uncovers Zonation of Function in the Mesenchyme during Liver Fibrosis
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Mel Eckersley-Maslin 7. stu
Wondered how chromatin is targeted? Our on Dppa2/4 is online! We use , and in to uncover an exciting new mechanism.
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Holger Heyn 15. sij
NIGHTMARE AFTER XMAS! SORRY/HAPPY to present our benchmarking work on sample preservation artifacts. We detected strong systematic biases related to sampling timing! MUST-READ for and of and clinical cohorts.
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Patrik Andersson 23. pro
More evidence that CD4+ T cells are important for CD8+ T cell cytotoxicity in cancer and infection. Published this month in : ___
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Daniel Lipka 20. ožu
Great work that demonstrates the critical steps in analysis both in library-prep and in computational analysis: A Systematic Evaluation of Single Cell RNA-Seq Analysis Pipelines
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Conor Gruber 18. lis
Excited to share our preprint on a patient with a JAK1 GoF mutation suffering systemic immunodysregulation—novel biology, custom , and that resolved a lifelong ! Huge thanks to all involved!
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Jan Hasenauer 4 h
Great tutorial by Malte Lücken on at the Workshop on Computational Models in Biology and Medicine 2020. Check out the paper: , , .
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