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Gautier Richard
@
Gautier_Rich4rd
Rennes, France
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PhD, Computational biologist @UMR_IGEPP INRAE. Exbioinfo @mpi_ie w/@AsifaAkhtar1 Fascinated by #epigenomics #HiC #reproduction #evolution #Rstats vinyls & music
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Tweetovi
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Pratim
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Osobe koje vas prate
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Gautier Richard
@Gautier_Rich4rd
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3 h |
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Les paroles sont belles, justes et pleines de vérité, mais le gouvernement n'en fera rien. Même en laissant les rues jonchées d'ordures et de rats le gouvernement reste inamovible et borné. Donc une tribune de plus ou de moins... C'est triste de délaisser la recherche comme cela. twitter.com/FerryDanini/st…
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Current Biology
@CurrentBiology
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3. velj |
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"If you are not careful, you could end up spending an inordinate amount of time on things like Twitter" & many other nuggets of wisdom from the inimitable @HarmitMalik in his Q&A cell.com/current-biolog… pic.twitter.com/uq3oXkabIJ
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Peter Kerpedjiev
@pkerpedjiev
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3. velj |
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Hey! We're actually halfway there and have an example of hg19 vs. hg19 here: higlass.io/l/?d=eIi3OsH-R…
For different genomes, there is an experimental solution. If you're interested, DM me or hop on our Slack channel (bit.ly/higlass-slack)
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Isabelle Fudal
@ifudal
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3. velj |
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A permanent position of Research Scientist is open in our team. We are looking for a scientist with expertise in Fungal Genetics to study the role of sexual reproduction on adaptation to plant resistance
@INRAE_France
jobs.inrae.fr/en/open-compet…
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Gautier Richard
@Gautier_Rich4rd
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3. velj |
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#Reproducible articles introduced by @eLife. I hope this will become the norm in the next 10 years. This would improve #Bioinformatics papers SO MUCH and help meeting @GOFAIRofficial requirements. #Science #research #sciencetwitter #FAIRdata
elifesciences.org/labs/ad58f08d/…
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Gautier Richard
@Gautier_Rich4rd
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1. velj |
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As @tangming2005 outlined in his tweet there's also github.com/slowkow/homerk… to parse HOMER motifs output. Really handy. I quitted using HOMER a while ago notably because of the pain of parsing the outputs.
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Gautier Richard
@Gautier_Rich4rd
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"marge" a R interface for "HOMER". Identify those motifs you like dearly and parse them easily within R with your favorite motif caller. REALLY nice! twitter.com/tangming2005/s…
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Gautier Richard
@Gautier_Rich4rd
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1. velj |
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Any link with TADs ? I know "TADs" are controversial in Arabidopsis. But it would be cool to check Hi-C profiles near BORDER bound sites.
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Alexis Verger
@Alexis_Verger
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1. velj |
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#reformedesretraites
retraite à 65 ans ancien système : 3089 euros net/mois
retraite à 65 ans nouveau système : 2553 euros net/mois
un grand merci à @clairemmathieu pour le partage des ses données et réflexions 2/2 pic.twitter.com/zu6J4rlGnp
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Jon Stokes
@jonst0kes
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1. velj |
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Our bioinformatics guy said the same in this debunking of the paper: theprepared.com/blog/no-the-20…
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Gautier Richard
@Gautier_Rich4rd
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Show them matplotlib vs ggplot2, show them the r-packages on bioconda, show them command-line tools developed entirely in R and deployable with conda like deepStats. What's the advantage of Python over R now? You can also ask them that single question.
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Gautier Richard
@Gautier_Rich4rd
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31. sij |
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Gautier Richard
@Gautier_Rich4rd
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31. sij |
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Talk about chromatin regulation 👍
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Guillaume Devailly
@G_Devailly
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30. sij |
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And yet targeted methylation and demethylation assays can have sustained impacts on transcription level. Causality can be in both directions.
pubmed.ncbi.nlm.nih.gov/31724704-harne…
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John Greally
@EpgntxEinstein
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30. sij |
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First the chromatin opens, then the DNA methylation is lost.
The chromatin opens because transcription factors (TFs) target those loci.
TFs tell DNA methylation and nucleosomes what to do at cis-regulatory loci. Not the other way around.
Your textbook needs a rewrite. twitter.com/molecularcell/…
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Alexis Verger
@Alexis_Verger
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31. sij |
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Il y a 20 ans, la recherche sur les #coronavirus était un 'sous-domaine' peu financé de la virologie. La recherche fondamentale est "inutile" jusqu'à ce qu'elle devienne soudainement la chose la plus importante au monde.
Imaginez si elle n'était plus du tout financée.....
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Gautier Richard
@Gautier_Rich4rd
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31. sij |
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The main trick I learned from those slides twitter.com/dhmontgomery/s…
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Gautier Richard
@Gautier_Rich4rd
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31. sij |
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Few tips and tricks for better plots! Check those slides ASAP: williamrchase.com/slides/assets/… . Kudos to @W_R_Chase twitter.com/W_R_Chase/stat…
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Sean Montgomery
@SeanAMontgomery
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30. sij |
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New Marchantia genome reassembly starring H3K27me3! Thanks to everyone who helped bring this together! Website with chromatin profiles, updated gene names: marchantia.info #FirstPaper #FirstTweet #NotTheLastPaper cell.com/current-biolog…
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Gautier Richard
@Gautier_Rich4rd
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31. sij |
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That's a hell of a pressure pic.twitter.com/uSerqzeE4h
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